_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-51
 Query name: gi|1043260120|ref|NP_001316366.1| ethanolaminephosphotransferase 1 [Danio rerio]
 Query range: 1-400  (total 400)

 Target: /data/www-rg/seblastian_results/890944594/tempfiles/temptarget.fasta
 Chromosome: OMLM01006824.1:subseq_18289,100878_ Strand: -
 Positions:
 -Exon 1  57265        57321
 -Exon 2  54833        54901
 -Exon 3  54236        54344
 -Exon 4  53533        53607
 -Exon 5  52536        52798
 -Exon 6  51098        51206
 -Exon 7  50948        50996
 -Exon 8  50683        50863
 -Exon 9  50400        50579
 -Exon 10 50000        50104

 Redox box: no

Query   MALYHYVTQEQLSGFDKYK <---Intron---> YSAVDSNPLSIYVMHPFWNSVVK <---Intron---> VLPTWLAPNLITFTGFMFLVLTFTML
        | || |||||||/|||||| <   2363bp   > |||||/||||/|||||||| ||| <   488bp    >  |||||||||||||||||||| | ||
Target  MVLYEYVTQEQLAGFDKYK                YSAVDTNPLSVYVMHPFWNFVVK                FLPTWLAPNLITFTGFMFLVLNFVML
        agctgtgacgccggtgata                tagggaacctgtgaccttatgga                tccattgcacaatagtatcgtatgat
        tttaaatcaaatcgtaaaa                agctacactctattactgattta                ttccgtccattctcgttttttatttt
        gttcatctgggtgcccacg                ctagcctggtcttgctcgctggg                caaagaaacctacactgctgacctgg
                                                                                                            

Query   SFFDFDFYASG <---Intron---> EGHTHVPSWVWIAAGLFNFLAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWACVFF
        /|/|||| ||  <   628bp    >  || |||||||/|||/||||||||| <   734bp    > |||||||||||||||||||||||||||||/||
Target  AFYDFDFTASA                AGHEHVPSWVWVAAGIFNFLAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWACIFF
        gttgtgtagtg                ggcgcgcatgtggggatattgtacg                ggggacgccaattaccggctgcgcgatgtatt
        ctaatatccc                ccgaaatcggtgtccgttattcact                agtagaacggcacccctgattaagtaggcgttt
        cctctcctct                taatacgttgcgttaaccccgctat                ttattaggacccccaaggattcctgccgccccc
                                                                                                            

Query   VATVYSVFGRGETGVSVVTLYYLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISIVYIITAVVGVETWYKPVFLNIHYRD
        | ||||/|||||/|| |||||//||||||||||||||||||||||||||||/||| <   1329bp   > |||/||//||||||||||/||  |  |||
Target  VVTVYSIFGRGESGVGVVTLYFILWVVLFSFILSHWEKYNTGILFLPWGYDMSQV                TISLVYLVTAVVGVETWYQPVLFNFLYRD
        ggagttatgcggagggggacttattggctttattctgataagattcctgtgaacg                aatcgttgaggggggattccgctatctag
        ttctacttgggaggtgttctatttgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaactttattaga
        gcttccatgaggtagcgcggctcaggggccctgtcggacctccgtgcggtcgtag                tctttcgcttgttgaggcaacacccccac
                                                                                                            

Query   LFTVMIIG <---Intron---> CLFVVTLPMSLYNVFK <---Intron---> AYRNNTLKHSSLYEALLPFFSPVLLFVLSTLWISFSPTNIVQKQ
        ||| |||  <   101bp    > |   |||||||||| | <    84bp    > |/||||||||||||| ||||||||||/||| |/ |||//|// |
Target  LFTFMIIA                CSLTVTLPMSLYNVLK                AHRNNTLKHSSLYEAFLPFFSPVLLFILSTAWVVFSPSDILELQ
        ctataaag                ttcagatcaactagca                gccaaacacaattggtcctttcgcctattagtggttctgacgcc
        ttctttt                cgctctctctgtaatta                cagaactaaggtaacttcttccttttttcccgtttcccattata
        ccctgaa                ctcctctgtgccctgg                gtcttctggcctgtatctactttcctccgcctggtctaccctgga
                                                                                                            

Query   PRIFYLMVGTAFSNVT <---Intron---> CKLIVCQMSNTRCKPLSLLLLPMSIVVLLVISGTVQGGESLVLFIWTAVVLLTHIHYGVSV <---In
        ||||||||||||/||| <   103bp    > |||||||||||||/ || ||||| /|||| |/| |   |/|/|//||  |/| |||||/|| <   29
Target  PRIFYLMVGTAFANVT                CKLIVCQMSNTRCQALSWLLLPMLVVVLLAITGVV-ANETLLLYLWTVAVILAHIHYGISV       
        caattcaggagtgaga                tacagtcaaaactcgcattcccatgggttgaaggg-gagaccctctagggacgcactgatg       
        cgttatttgcctcatc                gatttgatgacggactggtttctttttttctcgtt-caactttatgctctttcataagtct       
        cgccccgggaacttaa                tagtgtggtcattatgtggggtggggggactcggc-ctgaagatggactcaaacacccaag       
                                                                                                            

Query   tron---> VKQLSDHFNIFAFSLKKPNSDUQDEEKIGLKAAEV
        5bp    > |/|||/|| ||||||||||||| /||/|||  |||
Target           VQQLSNHFKIFAFSLKKPNSDUHEEERIGLTEAEV
                 gcccaactaatgttcaacaagtcgggcagtagggg
                 taatgaatattctctaacagagaaaagtgtcacat
                 aagcccccacccccgggcctcatggaaccggaggt
                                      *             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 975 ; UGA-SECIS: 1014

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01006824.1:subseq_18289,100878_ Strand = - Positions = 49024 - 48951
 Found by:  Infernal (score=35.67) Covels (score=23.4)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -19.57

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...(({(((---((..([[(((((({((((..................))))}))))))]])..--..)))))}))...
 target  CACAGCGCU---UGAAUGAAGAGUGUGUCCAAAAGCCGUCAAUGGAGCGGACUCACUCUGAAGA--AACAAGCCUUCGC
                         ****          ^^^                         ****